PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02850.10
Common NameJCGZ_26758, LOC105630352
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family SRS
Protein Properties Length: 221aa    MW: 24084 Da    PI: 8.6502
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02850.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702172.12.9e-5391444154
         DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 
                    g+++CqdCGnqakk+C+h+RCRtCCks+gf+C+thvkstW+pa++rr r ++ a ++++         ++++r+     +s+ ++ +ls   + + 
  Jcr4S02850.10   9 GGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIAVQQQN--------PHQQPRT-----NSNPKRLRLS---PLTG 88 
                    6789********************************************97666664333........3334443.....3444455544...3457 PP

         DUF702 100 letsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                    le+ ++P+ev+s a frc r+ss+d+ g+ +laYqt+v igGhvf+GiLydqG+++
  Jcr4S02850.10  89 LEVGNFPAEVNSIATFRCFRMSSIDEeGDYQLAYQTSVGIGGHVFQGILYDQGPHQ 144
                    89999********************978999***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.7E-5310143IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.3E-281354IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.4E-2394142IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MMRQGGLLGG SRCQDCGNQA KKECVHMRCR TCCKSKGFEC QTHVKSTWIP AYRRRLRPSN  60
IAVQQQNPHQ QPRTNSNPKR LRLSPLTGLE VGNFPAEVNS IATFRCFRMS SIDEEGDYQL  120
AYQTSVGIGG HVFQGILYDQ GPHQESFSTQ LLQDTNNNNN NLTSSGALIS TSTALTTAIT  180
TATTTAASIL SSSVGAEHSS SYPFPLNAFT SGSGLMYVCH P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067549.11e-137PREDICTED: protein SHI RELATED SEQUENCE 3
SwissprotQ9LQZ51e-52SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A067LB871e-137A0A067LB87_JATCU; Uncharacterized protein
STRINGPOPTR_0009s12450.12e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99692541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.16e-51Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]